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At1g70070 SYNGENTA 73215

Genomic Sequence (from TAIR)
ccaagccaaatttgtatccgcagccgcaacccaaaaataagttgtttcagtttaagttgtctttgttttcttggttgttagtctgtcttgaaaaccatct
tttaatcagtaataaagcttgtcattagactatcaaaactaacaataatccgaataacaatctatgaatacgtagttaacacttatagtagtgggatttg
gctttctctgcagatgtgcaattatctatttttttattagcaccgataagaaaaaaaaaatattaattttttctttgttattcgcttagttaataatatt
aaaacgggcattcttcgaaatatattgtgtacgtaagtgacatcaagcgggtcaataggaacttttcgtagaaaataatccgtttttacatcagacaaaa
aaatattcatttatctgagaaaataataattaattgggtgtaatatccaaaagccaaaaaaaaatcaaatcttgaaatgccctgaaaacATGAACACTCT
TCCCGTCGTCTCTCTCACAGCTTCTTCTTCCTTCAAATTCTTCCATTTTCCTTCTCTGCACCGTTCTCTCTCTCATTCCCCAAACTTCTCCTTCACCAAA
TCCCTTATCCTCAATCCAAACCACCTCTCCTTCAAATCCACCTTAAATTCTCTTTCACCGTCTCAGTCTCAGCTCTACGAGGAAGAAGACGACGAAGAAG
AAGAAGAAGAAGACGAAGATGATGATGACGAAGCTGCTGACGAATACGACAATATCTCCGATGAAATTCGGAATAGCGATGACGACGACGACGATGAAGA
AACCGAATTCTCCGTGGATTTGCCGACGGAATCAGCTCGGGAACGAGTGGAGTTCCGGTGGCAGAGAGTGGAGAAGCTTCGTAGTCTTGTTAGAGATTTT
GGTGTTGAGATGATTGATATCGATGAACTCATTTCAATCTACGATTTTCGAATCGACAAGTTTCAGAGATTGGCTATTGAAGCTTTTCTTAGAGGTTCTT
CTGTTGTGGTTTCTGCTCCGACTAGTAGTGGCAAGACTTTGATTGCTGAAGCTGCTGCTGTTTCCACGGTGGCTAAAGGTCGCCGGTTGTTCTACACTAC
ACCTCTTAAAGCACTCTCTAATCAGAAGTTTCGTGAGTTTAGGGAGACATTTGGGGATGATAATGTTGGTCTACTCACAGGTGACTCTGCTATTAACAAA
GATGCTCAGATTGTGATTATGACTACAGAGATTCTCCGTAACATGTTGTATCAAAGgtattttgcaactgcagctctctctgtgtgtattttatatggtt
tgctcaggagcttctttttaacctcaatttttgtgttgaaatcttttttagTGTTGGAATGGCTTCTTCAGGAACTGGACTTTTTCATGTTGATGCCATT
GTTTTGGATGAGGTTCACTATTTAAGTGATATATCTAGGGGAACTGTGTGGGAAGAGATAgtgagttttttttcccactgtttctcttctttcctccaaa
ggctttatctgttgagtgtttctaagttggtttctgtgtttcaaatacgatcagGTCATTTATTGTCCAAAGGAGGTTCAACTTATATGCCTATCAGCTA
CAGTTGCAAATCCGGATGAATTAGCTGGTTGGATTGGTGAGgtgagtctgtggacatttttcctataggaatagcttttctttatcgtgttcatatcata
aggagttataacaatgtacgtagtgccttgttcatcgtctcatttatcttctattgttaagcaacttatatattgttttgctgatgaagtatctcaattt
ctagtaatcttgtactaatacacggttatttaagatgctttcgtgttttgttctcagATACATGGTAAAACTGAGTTGGTAACATCGACAAGACGCCCAG
TTCCATTAACTTGGTACTTTTCAACAAAACATTCTTTATTACCTCTGCTTGATGAGAAAGGGATAAACGTGAATAGgtaactggttcaaatctgtacttt
tatcaccaacatttattgtaaaatctttctctttgataataattggaggatgctttttaattggagcagGAAGCTTTCTCTCAATTATTTGCAACTGTCT
GCCTCAGAAGCTAGATTCCGTGATGATGATGACGGGTATAGGAAAAGGAGGTCAAAGAAACGAGGAGGTGATACCAGCTACAACAACCTTGTGAACGTAA
CTGATTATCCTCTTTCAAAGAATGAGATAAACAAGATTCGTCGATCACAGgtcttacattatgctttctaacaaccctaacaaactaggcatttgtcgtt
tcttatatatttgaatatgatttttaacttctcatgataatttaatgactgctgagttttgatttctagGTACCTCAAATTAGCGACACATTATGGCATC
TCCAGGGGAAAAATATGTTACCAGCGATATGGTTCATTTTTAACCGTAGAGGATGTGATGCAGCTGTACAGTATGTTGAAAATTTTCAGCTTTTAGATGA
TTGCGAGAAGAGTGAGGTTGAGTTGGCCTTGAAGAAGTTTCGCGTTCTTTATCCAGATGCAGTGAGAGAGAGTGCAGAGAAAGGACTGCTTAGGGGAATT
GCTGCTCATCATGCAGGTTGTCTACCTCTTTGGAAATCTTTCATTGAGGAACTTTTTCAGCGAGGACTTGTTAAGGTTGTCTTTGCTACTGAGACACTTG
CTGCTGGAATAAACATGCCGGCTAGAACGGCTGTTATCTCGTCTCTTTCAAAAAAGGCTGGTAATGAACGAATAGAGTTGGGTCCTAACGAATTGTACCA
GATGGCTGGGCGTGCTGGACGCAGAGGCATCGATGAAAAGGGCTACACTGTGCTGGTTCAGACTGCTTTTGAAGGCGCTGAAGAGTGCTGCAAACTTGTC
TTTGCTGGAGTTAAACCTCTCGTGTCACAATTTACTGCTTCATATGGCATGGTACTGAATCTGGTAGCTGGTTCAAAAGTTACTCGTAAATCAAGTGGAA
CTGAGGCCGGGAAAGTCTTACAAGCAGGGAGAAGTCTGGAAGAAGCCAAGAAATTAGTTGAGAAGAGTTTTGGAAACTATGTGAGCAGCAATGTGACGGT
TGCTGCGAAGCAGGAACTTGCTGAAATCGACAATAAGATCGAGATTCTGTCATCTGAAATAAGTGATGAAGCAATAGATAAGAAGAGTAGGAAACTTCTT
TCAGCGAGGGATTACAAGGAGATCACTGTACTTAAAGAAGAGCTACGGGAAGAGAAACGCAAGCGTGCTGAACAACGAAGAAGAATGGAACTCGAAAGGT
TCTTAGCTCTAAAACCGCTCTTAAAAGGGATGGAAGAGGGGAACTTACCATTTATTTGTTTGGAGTTCAAGGATTCTGAAGGGAGGGAGCAGTCAGTCCC
TGCTGTTTACTTGGGGCATATTGATTCATTTCAGGGTTCCAAACTTCAGAAGATGATGTCTTTGGATGAGTCTTTTGCGTTAAACTTAATCGAGGATGAG
CTGGCGGCTGATGAACCTGGAAAGCCTAATGTTAAACCGTCTTACTATGTGGCCCTTGGCTCTGATAACTCATGGTATCTCTTTACTGAGAAGTGGGTTA
GGACTGTCTACAGAACTGGTTTCCCTAACATTGCTCTAGCGCTTGGAGATGCTTTGCCTCGAGAAATCATGAAGAATCTCCTGGATAAAGCAGATATGCA
GTGGGATAAACTAGCTGAATCTGAACTTGGAAGTTTGTGGAGATTGGAAGGATCTCTAGAGACATGGTCCTGGAGTTTAAACGTACCTGTCCTAAGC
AGCCTTTCTGACGAAGATGAGGTGTTACATATGTCCGAAGAGTATGATAACGCGGCGCAAAAATACAAGGAACAAAGGAGCAAAATTTCGCGTTTGAAG
AAGAAGATGTCCCGGTCAGAAGGGTTCAGAGAATATAAGAAAATTCTAGAGAATGCTAACTTGACGGTTGAGAAGATGAAACGGCTCAAGGCGAGATCGA
GACGCCTTATAAACCGTTTAGAGCAGATTGAACCGTCTGGTTGGAAAGATTTCATGCGCATAAGCAACGTGATTCACGAAAGCAGAGCATTGGACATTAA
TACACACTTGATATTTCCTCTGGGAGAAACAGCTGCTGCAATCCGAGGAGAAAACGAGCTTTGGCTTGCAATGGTGTTGCGGAACAAAGCCCTGGTGGAT
CTCAAGCCTCCTCAACTAGCTGGTGTATGTGCAAGTTTAGTTTCAGAAGGCATAAAAGTTCGACCTTGGAGAGACAACAACTATATTTACGAGCCATCTG
ATACAGTAGTAGACATGGTCAATTTCTTAGAAGACCAAAGAAGCTCTCTTATAAAGCTTCAAGAGAAGCACGAGGTTATGATTCCATGTTGTCTGGACGT
TCAGTTCTCTGGTATGGTTGAAGCTTGGGCTTCTGGATTAAGTTGGAAAGAAATGATGATGGAATGTGCAATGGACGAAGGCGATCTTGCTCGCCTGTTA
CGACGCACAATTGATCTCTTAGCTCAGATTCCTAAGTTGCCTGATATTGACCCAGTCCTGCAACGTAGTGCAGCAGCTGCAGCAGATATCATGGACCGTC
CACCAATTAGTGAGCTTGCCGGTTAAagtgaaccccacattagctctgtctttagtgagacccattggcaaaaaaaacacaagagcctgggatgtgcaag
aagtgcatatgtaagaattggggatacaagaacaaatttttcattcagatgattaatgttggaaagaataggagcaacaaagaagaaattttaattaatg
ttacaacatacaaaatgcttatatacacaatgggaaacaagacttcaaggcttgggcagttaatccgtttagtattccttcgattttccccctccctccc
tttttattttctgtgagaatacaacagggaccagaggcagtaacagaagtaagagccatcttacatttcttctcttctgacaaagctcaatgctgagtat
ggcaaccttttatctctcaaaaagtgcgaagttgctctattcccgagcgttttctggtagtaagtgacagatgtcattgaccggtgagaagtttttgata
tctt

Border_1 (73215_LB1D)

GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTWYCRRKACAYTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAAACTTC
CAAGTTCAGATTCAGCTAGTTTATCCCACTGCATATCTGCTTTATCCAGGAGATTCTTCATGATTTCTCGAGGCAAAGCATCTCCAAGCGCTAGAGCAAT
GTTAGGGAAACCAGTTCTGTAGACAGTCCTAACCCACTTCTCAG:TAAAGAGATACCATGAGTTATCAGAGCCAAGGGCCACATAGTAAGACGGTTTAAC
ATTAGGCTTTCCAGGTTCATCAGCCGCCAG:CTCATCCTCGATTAAGTTTAACG:CAAAAGACTCATCCAAAGACATCATCTTCTGAAGTTTGGAACCCT
GAAATGAATCAATATGCCCCAAGTAAACAGCAGGGACTGACTGC:TCCCTCCCTTCA:GAATCCTTGAACTCCAAACAAATAAATGGTAAGTTCCCCTCT
TCCATCCCTTTTAAGAGCGGTTTTAGAGCTAAGAACCTTTCGAGTTCCATTCTTCTTCGTTGTTCAGCACGCTTGCGTTTCTCTTCCCGTAGCTCTTCTT
TAAGTACAGTGATCTCCTTGTAATCCCTCGCTGAAAGAAGTTTCCTACTCTTCTTATCTATTGCTTCATCACTTATTTCAGATGACAGAATCTCGATCTT
ATTGTCGATTTCAGCAAGTTCCTGCTTCGCAGCAACCGTCACATTGCTGCTCACATAGTTTCCAAAACTCTTCTCAACTAATTTCTTGGCTTCTTCCAGA
CTTCTCCCTGCTTGTAAGACTTTCCCGGCCTCA

Start of BLAST Alignment:NT 3253 / Exon 6 of 6
First 15 bp Perfect Match:NT 3251 / Exon 6 of 6
BLAST Details:
Query Sequence: 73215_AbBU 
Length: (771 letters) 
Database: Genes from AGI, Total Genome (DNA);
                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

At1g70070 68414.t07384 DEAD/DEAH box helicase, putative s...  2431  1.0e-105  1


>At1g70070 68414.t07384 DEAD/DEAH box helicase, putative similar to SP|P35207
           Antiviral protein SKI2 {Saccharomyces cerevisiae}; contains Pfam
           profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase
           conserved C-terminal domain
        Length = 4181

  Plus Strand HSPs:

 Score = 2431 (370.8 bits), Expect = 1.0e-105, P = 1.0e-105
 Identities = 531/588 (90%), Positives = 531/588 (90%), Strand = Plus / Plus

Query:   167 ATGGTCNNTGGAGTTTANAACGNNCNCTGTCCNAAACCNGCCTTTCTGNGNNAACANNAG 226
             ||||||  ||||||||| ||||  | |||||| || |  |||||||||    || |  ||
Sbjct:  3323 ATGGTCC-TGGAGTTTA-AACGTAC-CTGTCCTAAGC-AGCCTTTCTGA-CGAAGATGAG 3377

Query:   227 GTGTTACATATGTCCTNAGANGTATGATNACCCGGCGCNAANATNCAAGGAACAAAGGAG 286
             |||||||||||||||  ||| ||||||| || |||||| || || |||||||||||||||
Sbjct:  3378 GTGTTACATATGTCCGAAGA-GTATGATAACGCGGCGCAAAAATACAAGGAACAAAGGAG 3436

Query:   287 CAAAATTTCGCGTTTNAAGAAGAANATGTCCCGGTCAGAAGGGTTCAGAGAATATAAGAA 346
             ||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||
Sbjct:  3437 CAAAATTTCGCGTTTGAAGAAGAAGATGTCCCGGTCAGAAGGGTTCAGAGAATATAAGAA 3496

Query:   347 AATTCTANAGAATGCTANCTTGACGGTTGAGAAGATGAANCGGCTCAAGGCGAGATCGAG 406
             ||||||| ||||||||| ||||||||||||||||||||| ||||||||||||||||||||
Sbjct:  3497 AATTCTAGAGAATGCTAACTTGACGGTTGAGAAGATGAAACGGCTCAAGGCGAGATCGAG 3556

Query:   407 ACNCCTNATAAACCGTTTAGAGCAGATTGAACCGTCTGGTTGGAAAGATTTCATGCGCAT 466
             || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  3557 ACGCCTTATAAACCGTTTAGAGCAGATTGAACCGTCTGGTTGGAAAGATTTCATGCGCAT 3616

Query:   467 AAGCAACGTGATTCACGAAAGGCNGAGCATTGGACATTAATACACACTTGATATTTCCTC 526
             ||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||
Sbjct:  3617 AAGCAACGTGATTCACGAAAG-CAGAGCATTGGACATTAATACACACTTGATATTTCCTC 3675

Query:   527 TGGGAGAAACAGCTGNNNCAATCCGAGGAGAAAACGAGCTTTGGCNTGCAATGGTGTTGC 586
             |||||||||||||||   ||||||||||||||||||||||||||| ||||||||||||||
Sbjct:  3676 TGGGAGAAACAGCTGCTGCAATCCGAGGAGAAAACGAGCTTTGGCTTGCAATGGTGTTGC 3735

Query:   587 GGAACAAANGCCCTGGTGNATCTCAAGGCCTCCTCAACTAGCTGGTGTATGTGCAAGTTT 646
             |||||||| ||||||||| |||||||| ||||||||||||||||||||||||||||||||
Sbjct:  3736 GGAACAAA-GCCCTGGTGGATCTCAAG-CCTCCTCAACTAGCTGGTGTATGTGCAAGTTT 3793

Query:   647 AGTTTCAGAAGGCATAAAAGTTCNACCNTGGAGATACNGCAACTATATTNACNAGCCATC 706
             ||||||||||||||||||||||| ||| |||||| ||  |||||||||| || |||||||
Sbjct:  3794 AGTTTCAGAAGGCATAAAAGTTCGACCTTGGAGAGACAACAACTATATTTACGAGCCATC 3853

Query:   707 TGATACAGTAGTAGNACATGGTCATTTTGGGANAAGCACCAAAANAGC 754
             |||||||||||||| ||||||||| |||   | ||| ||||||  |||
Sbjct:  3854 TGATACAGTAGTAG-ACATGGTCAATTTCTTAGAAG-ACCAAAGAAGC 3899


Border_2 (73215_AbBU)

CATNNANNGCGNGNTTTTGNTCNCNANCTNCCCGNTCGGGNAGCCGTTGGCCTGGTNGGTTTAACACCCACNANATCGGGGATCNTTATCATATAAAACC
CNCCNCANANATCCGGGGAAAANGTNCCCCCANTGTGTCTATTAATTTGTCTAAGGCGTCAACCTAATGGTCNNTGGAGTTTANAACGNNCNCTGTCCNA
AACCNGCCTTTCTGNGNNAACANNAGGTGTTACATATGTCCTNAGANGTATGATNACCCGGCGCNAANATNCAAGGAACAAAGGAGCAAAATTTCGCGTT
TNAAGAAGAANATGTCCCGGTCAGAAGGGTTCAGAGAATATAAGAAAATTCTANAGAATGCTANCTTGACGGTTGAGAAGATGAANCGGCTCAAGGCGAG
ATCGAGACNCCTNATAAACCGTTTAGAGCAGATTGAACCGTCTGGTTGGAAAGATTTCATGCGCATAAGCAACGTGATTCACGAAAGGCNGAGCATTGGA
CATTAATACACACTTGATATTTCCTCTGGGAGAAACAGCTGNNNCAATCCGAGGAGAAAACGAGCTTTGGCNTGCAATGGTGTTGCGGAACAAANGCCCT
GGTGNATCTCAAGGCCTCCTCAACTAGCTGGTGTATGTGCAAGTTTAGTTTCAGAAGGCATAAAAGTTCNACCNTGGAGATACNGCAACTATATTNACNA
GCCATCTGATACAGTAGTAGNACATGGTCATTTTGGGANAAGCACCAAAANAGCCNTTAGGNGTCCTTCNA

Start of BLAST Alignment:NT 3274 / Exon 6 of 6
First 15 bp Perfect Match:NT 3327 / Exon 6 of 6