At4g09980 SYNGENTA 34806
Genomic Sequence (from TAIR)
ttatttgtcttccgtgaagtttaagattaaatcttcccaaatttgaaagttcgtgatttttttgacaattttccccatttgtttaggtgaattggaataa atgggcttggcccaataacacaatttttagacactaggtaaattggagtaaatgggcttcacccaat◄ccattttgacttc◄tgtgtatgtcgttcgtgt tcctcgcacttcgccgtgttctctctctctctcacaaactcactcatcttctccgacccaacattttccgatcttcttcgctctaatttcatttctaaac tcaaatttttcatctgtaatctcgaaacgattttggaattgaaaatccaaactctattgtggatgttttaagtaacgaaactcagttatagaaaatcgaa cccgaattgatcgtggtaatgtcgaaaccctaatttcgtgggtttagggttttgtagcacagttttcgcaaaaaaATGAAGAAGAAACAAGAAGAGAGTT CGTTGGAGAAGCTAAGTACTTGGTATCAAGATGGAGAGCAAGACGGTGGAGATAGAAGTGAGAAGAGAAGAATGAGTCTTAAAGCATCAGACTTTGAGAG TAGTTCTCGAAGTGGTGGAAGTAAAAGCAAAGAAGATAATAAGTCTGTTGTTGATGTTGAGCATCAAGATCGTGATTCCAAGAGAGAAAGAGATGGGAGA GAACGAACACATGGATCTTCTTCTGATTCGAGTAAGAGGAAGAGATGGGATGAAGCAGGTGGTCTTGTTAATGATGGTGATCATAAAAGTAGTAAGCTTT CTGATTCTAGACATGATAGTGGTGGAGAAAGAGTTAGTGTTAGTAATGAACATGGTGAGAGTAGGAGAGATTTGAAGTCTGATAGGAGTTTGAAGACTAG TAGTAGAGATGAGAAGAGTAAGAGTCGTGGTGTGAAAGATGATGATAGAGGTAGTCCTTTGAAGAAAACTAGTGGTAAGGATGGTTCTGAGGTAGTTAGA GAAGTGGGTCGATCTAATAGGTCGAAAACACCGGATGCGGATTATGAGAAGGAGAAGTATAGTCGAAAAGATGAGAGGTCTAGAGGTAGGGATGATGGGT GGTCTGATAGGGATAGAGATCAAGAAGGTTTGAAGGATAATTGGAAGAGAAGGCATTCTAGTAGTGGTGATAAAGATCAGAAAGATGGGGACTTGCTTTA TGATCGTGGTAGGGAACGGGAATTTCCTAGGCAAGGACGTGAAAGGAGTGAAGGAGAGAGGTCTCATGGTCGTTTGGGTGGGAGGAAAGATGGAAACAGG GGGGAAGCTGTTAAAGCTTTGTCCAGTGGTGGCGTTTCAAATGAGAATTATGATGTGATTGAGATACAAACCAAGCCACATGATTATGTCAGGGGAGAAT CAGGACCCAACTTTGCTCGTATGACTGAATCTGGTCAGCAACCTCCTAAAAAACCTAGTAATAATGAGGAAGAGTGGGCTCACAACCAGGAAGGTAGACA GAGAAGTGAAACTTTTGGTTTTGGGTCTTATGGGGAAGATTCGAGAGATGAAGCTGGTGAAGCCAGTTCTGATTACTCAGGGGCTAAAGCAAGAAACCAG AGAGGTTCAACACCTGGTAGAACTAATTTTGTGCAAACCCCTAATCGTGGTTATCAGACTCCACAAGGCACTAGAGGGAACAGACCCTTAAGGGGTGGGA AAGGAAGACCTGCCGGTGGCAGAGAAAACCAACAAGGTGCCATTCCAATGCCTATCATGGGGTCACCATTTGCAAACCTTGGAATGCCACCACCCAGTCC CATTCATTCTCTTACTCCTGGCATGTCGCCAATTCCGGGCACTTCTGTCACCCCTGTCTTCATGCCTCCATTTGCCCCAACTCTTATATGGCCTGGGGCC CGAGGTGTTGATGGTAATATGCTACCTGTTCCTCCTGTTCTTTCACCTCTTCCTCCCGGACCATCAGGCCCAAGATTTCCTTCAATCGGCACACCACCAA ACCCGAATATGTTCTTTACTCCACCAGGTTCTGATAGAGGAGGGCCTCCTAACTTTCCTGGGTCCAATATTTCTGGACAAATGGGACGTGGAATGCCATC TGATAAGACTTCAGGGGGATGGGTTCCTCCTCGAGGTGGTGGACCTCCTGGTAAAGCTCCTTCTAGGGGAGAGCAAAATGACTATTCCCAGAACTTTGTG GATACTGGAATGCGGCCCCAGAATTTCATTCGGGA►GCTGGAGCTTACCAATGTGGAAGACTACCCCAAGCTTAGAGAGCTCATACAGAAGAAGGATGAG ATTGTATCTAATTCTGCTTCTGCACCAATGTATCTGAAAGGCGACTTGCATGAAGTTGAGTTATCTCCCGAGTTATTTGGAACAAAGTTTGATGTTATTC TTGTTGACCCACCATGGGAGGAATATGTCCATAGAGCTCCTGGTGTTTCTGATAGTATGGAGTATTGGACATTTGAGGACATTATCAATCTCAAGATTGA Ggtgactatcctctacactcttcaattactcataggattttagggtacatgcattcgctcgttggtatacttcaattgctctttgcttagcaatagatct aatagcggggtagcatatatcatctgtcatctgagtattatctagatgaagtagtggtactcaacatatagtaatttaacttgtgtgtaggaccttgtgg gtaaagttacctagatgacgtagtggtactcaacatatagatatagtaacttaacttgtctgtaaatcttgtgggtacggtttcctagatgatgtagctg gtacgaaacatatagtattttaacttgtgtgtagaccttgtaggtaaggttgtttgccatcattgttatttataacaaaagtgaattcttccatgtatat gtagGCAATAGCTGACACTCCATCCTTCCTCTTCCTCTGGGTTGGTGATGGTGTTGGGCTTGAGCAAGGGCGCCAATGCCTGAAAAAGgtacaggatcca aaccaaatcgcatttcctttattgttttggatttgtttctcttgacagtatgtacttaatctgtatttattttgtttgggtttgacagTGGGGTTTCAGA AGGTGTGAAGACATTTGCTGGGTGAAAACCAACAAAAGTAATGCAGCACCAACATTGCGACATGATTCTCGTACTGTGTTTCAGCGTTCCAAGgtccagt atggtctgccattgccttctcttttgttttccgtgttgcatatcttttgcttaatcttttgtattggtttctctttgtatagGAGCACTGCTTGATGGGG ATAAAGGGTACTGTTCGACGTAGCACTGATGGCCATATAATCCATGCTAACATCGACACTGACGTAATTATTGCTGAAGAGCCTCCTTATGGTTAGtaaa atgtgtgttcctgatagactgataaaatcgagagtgtcttgcttgtcatatcatgttccttctctctgttctgcttccagcatcctgtttcttttaaagt gagcatgctagtacatcagcaatcaattgtgtataaataggatcgttgcttaatgtgattaaggtatcgagtgtttttgtatttggtactagtgttggga ggcaaggttttgggttctcgaaaacaaagacctatgtttcttttggctctcggttatggtacacgtgattagtttgctggattagtcttgggttatccac actgtaagctggttcattgagaaatacattagattctgtggttgattttagcattgccatgtctaaaatattagtgaatttgtatcctcctattattgca agc
Border_1 (34806_LB2)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTTCATTCGACACGGC
GAACGGCGAAGATGGGATTGGGTGAAGCCCATTTACTCCAATTTACCTAGTGTCTAAAAATTGTGTTATTGGGCCAAGCCCATTTATTCCAATTCACCTA
AACAAATGGGGAAAATTGTCAAAAAAATCACGAACTTTCAAATTTGGGAAGATTTAATCTTAAACTTCACGGAAGACAAATAAATCGTAAAGTTTTTGTT
GATTTTCGAAATAAATGACAAAGTTTTTGTTGACTTCCCATTTGAGTCATGTCGTTAAATAGGTTAACAGAATTATTTTACGGCGTTAATGTCTCGTGTA
TATGCTCTGTTAGAACAAAACGACGTCGATTATTGAGAGACAAAAGAACGTCGTTTTGTCTGTTAAAACAAATTTAAACCATGAATCTCCAATTCGATTT
TATTATCTGCGATTTTGAGGTCAAGGGTGGGTCTCT
| Start of BLAST Alignment: | NT < 293 / Upstream |
| First 15 bp Perfect Match: | NT < 306 / Upstream |
BLAST Details: Query Sequence: 34806_LB2 Length: (636 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T5L19 67097 2093 2.3e-88 1 MZF18 67664 1572 7.9e-65 1 F24C20 51142 1549 8.7e-64 1 T8P19 67263 1452 2.1e-59 1 T5L19 67097 Length = 92,495 Plus Strand HSPs: Score = 2093 (320.1 bits), Expect = 2.3e-88, P = 2.3e-88 Identities = 429/436 (98%), Positives = 429/436 (98%), Strand = Plus / Plus Query: 201 GAACGGCGAAGATGGGATTGGGTGAAGCCCATTTACTCCAATTTACCTAGTGTCTAAAAA 260 ||| | | || |||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38130 GAA-GTCAAA-ATGG-ATTGGGTGAAGCCCATTTACTCCAATTTACCTAGTGTCTAAAAA 38186 Query: 261 TTGTGTTATTGGGCCAAGCCCATTTATTCCAATTCACCTAAACAAATGGGGAAAATTGTC 320 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38187 TTGTGTTATTGGGCCAAGCCCATTTATTCCAATTCACCTAAACAAATGGGGAAAATTGTC 38246 Query: 321 AAAAAAATCACGAACTTTCAAATTTGGGAAGATTTAATCTTAAACTTCACGGAAGACAAA 380 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38247 AAAAAAATCACGAACTTTCAAATTTGGGAAGATTTAATCTTAAACTTCACGGAAGACAAA 38306 Query: 381 TAAATCGTAAAGTTTTTGTTGATTTTCGAAATAAATGACAAAGTTTTTGTTGACTTCCCA 440 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38307 TAAATCGTAAAGTTTTTGTTGATTTTCGAAATAAATGACAAAGTTTTTGTTGACTTCCCA 38366 Query: 441 TTTGAGTCATGTCGTTAAATAGGTTAACAGAATTATTTTACGGCGTTAATGTCTCGTGTA 500 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38367 TTTGAGTCATGTCGTTAAATAGGTTAACAGAATTATTTTACGGCGTTAATGTCTCGTGTA 38426 Query: 501 TATGCTCTGTTAGAACAAAACGACGTCGATTATTGAGAGACAAAAGAACGTCGTTTTGTC 560 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38427 TATGCTCTGTTAGAACAAAACGACGTCGATTATTGAGAGACAAAAGAACGTCGTTTTGTC 38486 Query: 561 TGTTAAAACAAATTTAAACCATGAATCTCCAATTCGATTTTATTATCTGCGATTTTGAGG 620 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 38487 TGTTAAAACAAATTTAAACCATGAATCTCCAATTCGATTTTATTATCTGCGATTTTGAGG 38546 Query: 621 TCAAGGGTGGGTCTCT 636 |||||| ||||||| | Sbjct: 38547 TCAAGG-TGGGTCTGT 38561 Minus Strand HSPs: Score = 1204 (186.7 bits), Expect = 3.3e-48, P = 3.3e-48 Identities = 272/305 (89%), Positives = 272/305 (89%), Strand = Minus / Plus
Border_2 (34806_LB1)
GCCTTTTCAGAAATGGATAAATAGCCTTGCTTCCTATTATATCTTCCCAAATTACCAATACATTACACTAGCATCTGAATTTCATAACCAATCTCGATAC
ACCAAATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCGCTGGAGCTTACCAATGTGGAAG
ACTACCCCAAGCTTAGAGAGCTCATACAGAAGAAGGATGAGATTGTATCTAATTCTGCTTCTGCACCAATGTATCTGAAAGGCGACTTGCATGAAGTTGA
GTTATCTCCCGAGTTATTTGGAACAAAGTTTGATGTTATTCTTGTTGACCCACCATGGGAGGAATATGTCCATAGAGCTCCTGGTGTTTCTGATAGTATG
GAGTATTGGACATTTGAGGACATTATCAATCTCAAGATTGAGGTGACTATCCTCTACACTCTTCAATTACTCATAGGATTTTAGGGTACATGCATTCGCT
CGTTGGTATACTTCAATTGCTCTTTGCTTAGCAATAGATCTAATAGCGGGGTAGCATATATCATCTGTCATCTGAGTATTATCTAGATGAAGTAGTGGTA
CTCAACATATAGTAATTTAACTTGTGTGTAGGACCTTGTGGGTAAAGTTACCTAGATGACGTAGTGGTACTCAACATATAGATATAGTAACTTAACTTGT
CTGTAAATCTTGTGGGTACGGTTTCCTAGATGATGTAGCTGGTACGAAACATATAGTATTTTAACTTGTGTGTAGACCTTGTAGGTAAGGGTGTTTGCCA
TCATTTGTTATTTATAACAAAAGTGAATTCTTCCATGTATATGGTAGGCAATAGCTGACACTCCAT
| Start of BLAST Alignment: | NT 1760 / Exon 1 of 4 |
| First 15 bp Perfect Match: | NT 1760 / Exon 1 of 4 |
BLAST Details: Query Sequence: 34806_LB1 Length: (866 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g09980 68417.t01556 methyltransferase MT-A70 family pr... 3406 8.7e-150 1 >At4g09980 68417.t01556 methyltransferase MT-A70 family protein low similarity to SP|P25583 Karyogamy protein KAR4 {Saccharomyces cerevisiae}, (N6-adenosine)-methyltransferase [Mus musculus] GI:10179948; contains Pfam profile PF05063: MT-A70 (S-adenosylmethionine-binding subunit of human mRNA:m6A methyl-transferase (MTase)) Length = 4554 Plus Strand HSPs: Score = 3406 (517.1 bits), Expect = 8.7e-150, P = 8.7e-150 Identities = 686/689 (99%), Positives = 686/689 (99%), Strand = Plus / Plus Query: 178 GCTGGAGCTTACCAATGTGGAAGACTACCCCAAGCTTAGAGAGCTCATACAGAAGAAGGA 237 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2019 GCTGGAGCTTACCAATGTGGAAGACTACCCCAAGCTTAGAGAGCTCATACAGAAGAAGGA 2078 Query: 238 TGAGATTGTATCTAATTCTGCTTCTGCACCAATGTATCTGAAAGGCGACTTGCATGAAGT 297 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2079 TGAGATTGTATCTAATTCTGCTTCTGCACCAATGTATCTGAAAGGCGACTTGCATGAAGT 2138 Query: 298 TGAGTTATCTCCCGAGTTATTTGGAACAAAGTTTGATGTTATTCTTGTTGACCCACCATG 357 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2139 TGAGTTATCTCCCGAGTTATTTGGAACAAAGTTTGATGTTATTCTTGTTGACCCACCATG 2198 Query: 358 GGAGGAATATGTCCATAGAGCTCCTGGTGTTTCTGATAGTATGGAGTATTGGACATTTGA 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2199 GGAGGAATATGTCCATAGAGCTCCTGGTGTTTCTGATAGTATGGAGTATTGGACATTTGA 2258 Query: 418 GGACATTATCAATCTCAAGATTGAGGTGACTATCCTCTACACTCTTCAATTACTCATAGG 477 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2259 GGACATTATCAATCTCAAGATTGAGGTGACTATCCTCTACACTCTTCAATTACTCATAGG 2318 Query: 478 ATTTTAGGGTACATGCATTCGCTCGTTGGTATACTTCAATTGCTCTTTGCTTAGCAATAG 537 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2319 ATTTTAGGGTACATGCATTCGCTCGTTGGTATACTTCAATTGCTCTTTGCTTAGCAATAG 2378 Query: 538 ATCTAATAGCGGGGTAGCATATATCATCTGTCATCTGAGTATTATCTAGATGAAGTAGTG 597 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2379 ATCTAATAGCGGGGTAGCATATATCATCTGTCATCTGAGTATTATCTAGATGAAGTAGTG 2438 Query: 598 GTACTCAACATATAGTAATTTAACTTGTGTGTAGGACCTTGTGGGTAAAGTTACCTAGAT 657 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2439 GTACTCAACATATAGTAATTTAACTTGTGTGTAGGACCTTGTGGGTAAAGTTACCTAGAT 2498 Query: 658 GACGTAGTGGTACTCAACATATAGATATAGTAACTTAACTTGTCTGTAAATCTTGTGGGT 717 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2499 GACGTAGTGGTACTCAACATATAGATATAGTAACTTAACTTGTCTGTAAATCTTGTGGGT 2558 Query: 718 ACGGTTTCCTAGATGATGTAGCTGGTACGAAACATATAGTATTTTAACTTGTGTGTAGAC 777 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 2559 ACGGTTTCCTAGATGATGTAGCTGGTACGAAACATATAGTATTTTAACTTGTGTGTAGAC 2618 Query: 778 CTTGTAGGTAAGGGTGTTTGCCATCATTTGTTATTTATAACAAAAGTGAATTCTTCCATG 837 ||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| Sbjct: 2619 CTTGTAGGTAAGGTTGTTTGCCATCATT-GTTATTTATAACAAAAGTGAATTCTTCCATG 2677 Query: 838 TATATGGTAGGCAATAGCTGACACTCCAT 866 |||||| |||||||||||||||||||||| Sbjct: 2678 TATATG-TAGGCAATAGCTGACACTCCAT 2705