At2g37920 SYNGENTA 26619
Genomic Sequence (from TAIR)
ttctctttttacaccaaattaaaggagATGTTGTCGAGCAAAAACGTTGTCGTAGTAGAGGCTTGGAACACCACCACCACAACGCAAACGCAAACGCCAC ATAGACCGTCACTGTTACACCCAACATTCTATTGGGGTTACAACTGCCAAGTGCTCTTCTCAGGCTGGCCTGGTTCTGACCGTGGGATGTATGCACTCGC ACTTATCTTCGTCTTCTTTCTGGCGTTCTTAGCTGAGTGGCTTGCTCGGTGCTCTGACGCGTCATCCATCAAACAGGGTGCCGATAAGCTTGCTAAAGTT GCATTTCGCACGGCTATGTATACCGTCAAGTCCGGCTTTAGCTACCTAGTGATTCTGGCTGTTGTTTCCTTCAACGGTGGTGTTTTCCTAGCCGCGATTT TCGGGCATGCTCTTGGGTTCGCTGTTTTCCGTGGGCGGGCGTTTAGGAATAGGGATATTCAATAActtgtgagtgtaaccaaccaaaccctatgagaatg gaatgttttttggttattgatttgatatgtgtgtgtgtgcattcgaatataattaagagagttgttttgtaacattttgtgaaaattgagttgactgaaa aagtcaacctaaaaattgtaaaatcaattttatattaaagaacaataaaaaaaaaatctggaacggataaaataattt◄gctcggcttcctcagctccaA TGGCGGCGACGATGATCGGAATT►AACCTC►TCCTGCTTCAAATCAACATCGTTCTTCTCACCGGACCTCAATTCTCTCCAATCAAAGCTCTCTCTCCTA TCTCTCAAACCCTCTCCAACACAGCCACGGAAATCAACAGTCATCCGTATGGGCGGTGGTCCGAGAACTTTCCCCGGCGGTGTATCAAAATGGCAATGGA AAAGGATGCAAGCGAAGAAACAGAAACAGCTTCTCAAAGCAAGGTTATGCAGAGAACGTCAGATCTACGAGATGCGAAAACGCGCCGAGCTAAAAGCGGC GGTGGCTGAGCTAGAACGACCATGGGAACCGATTCATAAACCACCGAATCTATTCTCAGTTTGTGCTGATGAGCAAGTTAAAGTACTCGCGGATCGGTTT CAGAAACCTGGTGGATTTGATTTATGGACTGATAGAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCTTCTGCTAGGTTTTTTCCTAAAGGTG TTGTTCATAGTGTTAAACCTTATGGTAGATTATCATCTAGCTCTGTTGTTGATGATGGTGATGAGAGTGAGGTTAAAGATGAAGAAATTGGGAAGAAGTT ACGTGGTCGTAGGGTGAGGAAGAGAGGTGATGATGGAGGTAAGAGGAGGACTGAAAATCGTGGTAATGGTGGGAGATTGAGAAATGGAGGGTCTTCTTCT TCTCAGGTGTATGATATGACTTTGCAGAATGATGGGAGATATGAAATTGGATCTTAGgtatgagttcttctttgttgtgtttggatcattgatgtctctg aacataatgtgtatgtaatctggaatagtttgattgtgattatgcaaagttttcagttttagggaagcaagtctctgtgttcaagtataggttttggttg atggattattgattggtataagcattgtctataaactggttaacccaccaaagtccttaaaggttggtccttttacctctacatcacaattcttacttcc ctcttcactagatatacctttcatcttcattttcttcattgtatcggcacaaaaaggcgtcatggatttattagagtaagaaacacgtaaaccatcattg gtgacatcaaactgcatgttatcttccgatgtcaatacatttccggatgatgaagcagaataaggcgatgatgatatacataaatccgaattcctctgtt ctg
Border_1 (26619_RescuedLB_U)
AATCRAATTCA:TTCGGCGTTAATTCAGTACATTAAAAACGT:CCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTAAATTATTTTATCCGTT
CCAGATTTTTTTTTTATTGTTCTTTAATATAAAATNGATTTTACAATTTTTAGGTTGACTTTTTCAGTCAACTCAATTTTCACAAAANGTTACAAAACAA
CTNTTTTAATTATATTCGAANGCCCNCNCNCNCATATCAAATCAATANCCAAAAAACATTCCATTNTCATAGGGTTNGGTNGGTTNCNCTCACAAGTTAT
TGAATATCCCTATTCCTAAACGCCCGCCCACGGAAAACAGCGAACCCAANAGCATGCCCGAAAATCGNGGNTAGGAAAACNCCNCCGTTGAAGGAAACAA
CAGCCANAATCACTAGGTAGCTAAAGCCGGACTTGACGGTTTACATAGCCGGGCGAAATGCAACTTTAGCAAGCTTATCGGCCCCCTGTTTGATGGATGA
CGCGTCAAAGCNCCGAGCAAGCCACTCAGTTAAAAACGCCAGAAAGAARACGAAGATAAGGTGCGAGGGCATACATCCCACGGTCAAAACCAGGCCAGCC
TGAAAAGANCACTTGGCAGGTTGTAACCCCAATAAAATGTTGGGGGGTAACANGTGACGGTCTATGKGGCGTTTGCGTTTTGCGTTGGGGGGGGGGGGGG
TTCCAAGGCCTTTACTACNANAACGTTTTTKGTYSNAMAACATCNTCCTTTTAATTTGGGG
| Start of BLAST Alignment: | NT < 20 / 5’ UTR |
| First 15 bp Perfect Match: | NT < 20 / 5’ UTR |
BLAST Details: Query Sequence: 26619_RescuedLB_U Length: (759 letters) Database: TIGR AGI BAC Sequences (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N T8P21 44466 2663 4.2e-114 1 T20P8 42106 345 2.3e-07 1 MUF9 67894 205 0.79 1 T8P21 44466 Length = 128,150 Minus Strand HSPs: Score = 2663 (405.6 bits), Expect = 4.2e-114, P = 4.2e-114 Identities = 578/652 (88%), Positives = 583/652 (89%), Strand = Minus / Plus Query: 733 SRACMAAAAACGTTNTNGTAGTAAAGGCCTTGGAANNNNNNNNNNNNNNAACGCAAAACG 674 ++| +||||||||| | |||||| |||| |||||| |||||||| || Sbjct: 74409 CGAGCAAAAACGTTGTCGTAGTAGAGGC-TTGGAACACCACCACCAC--AACGCAAA-CG 74464 Query: 673 CAAACGCCMCATAGACCGTCACNTGTTACCCCCCAACATTTTATTGGGGTTACAACCTGC 614 ||||||||+||||||||||||| |||||| ||| |||||| ||||||||||||||| ||| Sbjct: 74465 CAAACGCCACATAGACCGTCAC-TGTTACACCC-AACATTCTATTGGGGTTACAAC-TGC 74521 Query: 613 CAAGTGNTCTTTTCAGGCTGGCCTGGTTTTGACCGTGGGATGTATGCCCTCGCACCTTAT 554 |||||| |||| |||||||||||||||| |||||||||||||||||| ||||||| |||| Sbjct: 74522 CAAGTGCTCTTCTCAGGCTGGCCTGGTTCTGACCGTGGGATGTATGCACTCGCAC-TTAT 74580 Query: 553 CTTCGTYTTCTTTCTGGCGTTTTTAACTGAGTGGCTTGCTCGGNGCTTTGACGCGTCATC 494 ||||||+|||||||||||||| ||| ||||||||||||||||| ||| |||||||||||| Sbjct: 74581 CTTCGTCTTCTTTCTGGCGTTCTTAGCTGAGTGGCTTGCTCGGTGCTCTGACGCGTCATC 74640 Query: 493 CATCAAACAGGGGGCCGATAAGCTTGCTAAAGTTGCATTTCGCCCGGCTATGTAAACCGT 434 |||||||||||| |||||||||||||||||||||||||||||| |||||||||| ||||| Sbjct: 74641 CATCAAACAGGGTGCCGATAAGCTTGCTAAAGTTGCATTTCGCACGGCTATGTATACCGT 74700 Query: 433 CAAGTCCGGCTTTAGCTACCTAGTGATTNTGGCTGTTGTTTCCTTCAACGGNGGNGTTTT 374 |||||||||||||||||||||||||||| |||||||||||||||||||||| || ||||| Sbjct: 74701 CAAGTCCGGCTTTAGCTACCTAGTGATTCTGGCTGTTGTTTCCTTCAACGGTGGTGTTTT 74760 Query: 373 CCTANCCNCGATTTTCGGGCATGCTNTTGGGTTCGCTGTTTTCCGTGGGCGGGCGTTTAG 314 |||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||| Sbjct: 74761 CCTAGCCGCGATTTTCGGGCATGCTCTTGGGTTCGCTGTTTTCCGTGGGCGGGCGTTTAG 74820 Query: 313 GAATAGGGATATTCAATAACTTGTGAGNGNAACCNACCNAACCCTATGANAATGGAATGT 254 ||||||||||||||||||||||||||| | |||| ||| |||||||||| |||||||||| Sbjct: 74821 GAATAGGGATATTCAATAACTTGTGAGTGTAACCAACCAAACCCTATGAGAATGGAATGT 74880 Query: 253 TTTTTGGNTATTGATTTGATATGNGNGNGNGGGCNTTCGAATATAATTAAAANAGTTGTT 194 ||||||| ||||||||||||||| | | | | || ||||||||||||||| | ||||||| Sbjct: 74881 TTTTTGGTTATTGATTTGATATGTGTGTGTGTGCATTCGAATATAATTAAGAGAGTTGTT 74940 Query: 193 TTGTAACNTTTTGTGAAAATTGAGTTGACTGAAAAAGTCAACCTAAAAATTGTAAAATCN 134 ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 74941 TTGTAACATTTTGTGAAAATTGAGTTGACTGAAAAAGTCAACCTAAAAATTGTAAAATCA 75000 Query: 133 ATTTTATATTAAAGAACAATNNNNNNNNNNTCTGGAACGGATAAAATAATTT 82 |||||||||||||||||||| |||||||||||||||||||||| Sbjct: 75001 ATTTTATATTAAAGAACAATAAAAAAAAAATCTGGAACGGATAAAATAATTT 75052 T20P8 42106 Length = 99,345 Minus Strand HSPs: Score = 345 (57.8 bits), Expect = 2.3e-07, P = 2.3e-07 Identities = 196/333 (58%), Positives = 197/333 (59%), Strand = Minus / Plus
Border_2 (26619_LBD)
AATCGAATTCAATTCGGCGTTAATTCAGTACATTAAAAACGTCCGCAATGTGTTATTAAGTTGTCTAAGCGTCAATTTGTTTACACCACAATATATCCTG
CTTCAAATCAACATCGTTCTTCTCACCGGACCTCAATTCTCTCCAATCAAAGCATCTCTCTCCTATCTCTCAAACCCTCTCCAACACAGCCACGGAAATC
AACAGTCATCCGTATGGGCGGTGGCTCCGAGAACTTTCCCCGGCGGTGTATCAAAATGGCAATGGAAAAGGATGCAAGCGAAGAAACAGAAACAGCTTCT
CAAAGCAAGGTTATGCAGAGAACGTCAGATCTACGAGATGCGAAAACGCGCCGAGCTAAAAGCGGCGGTGGCTGAGCTAGAACGACCATGGGAACCGATT
CATAAACCACCGAATCTATTCTCAGTTTGTGCTGATGAGCAAGTTAAAGTACTCGCGGATCGGTTTCAGAAACCTGGTGGATTTGATTTATGGACTGATA
GAGATGGTCCTCAATTGTTTGAGAGTGTTGATGATTTGCCTTCTGCTAGGTTTTTTCCTAAAGGTGTTGTTCATAGTGTTAAACCTTATGGTAGATTATC
ATCTAGCTCTGTTGTTGATGATGGTGATGAGAGTGAGGTTAAAGATGAAGAAATTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGAGAGGTGATG
| Start of BLAST Alignment: | NT 24 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 30 / Exon 1 of 1 |
BLAST Details: Query Sequence: 26619_LBD Length: (698 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At2g37920 68415.t04293 expressed protein 2988 3.1e-130 1 At2g07750 68415.t00938 DEAD box RNA helicase, putative si... 394 8.2e-11 1 At1g62760 68414.t06492 invertase/pectin methylesterase in... 214 0.16 1 At4g09300 68417.t01467 expressed protein 210 0.31 1 >At2g37920 68415.t04293 expressed protein Length = 963 Plus Strand HSPs: Score = 2988 (454.4 bits), Expect = 3.1e-130, P = 3.1e-130 Identities = 604/609 (99%), Positives = 604/609 (99%), Strand = Plus / Plus Query: 90 AATATATCCTGCTTCAAATCAACATCGTTCTTCTCACCGGACCTCAATTCTCTCCAATCA 149 || | |||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 72 AACCTCTCCTGCTTCAAATCAACATCGTTCTTCTCACCGGACCTCAATTCTCTCCAATCA 131 Query: 150 AAGCATCTCTCTCCTATCTCTCAAACCCTCTCCAACACAGCCACGGAAATCAACAGTCAT 209 |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 132 AAGC-TCTCTCTCCTATCTCTCAAACCCTCTCCAACACAGCCACGGAAATCAACAGTCAT 190 Query: 210 CCGTATGGGCGGTGGCTCCGAGAACTTTCCCCGGCGGTGTATCAAAATGGCAATGGAAAA 269 ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct: 191 CCGTATGGGCGGTGG-TCCGAGAACTTTCCCCGGCGGTGTATCAAAATGGCAATGGAAAA 249 Query: 270 GGATGCAAGCGAAGAAACAGAAACAGCTTCTCAAAGCAAGGTTATGCAGAGAACGTCAGA 329 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 250 GGATGCAAGCGAAGAAACAGAAACAGCTTCTCAAAGCAAGGTTATGCAGAGAACGTCAGA 309 Query: 330 TCTACGAGATGCGAAAACGCGCCGAGCTAAAAGCGGCGGTGGCTGAGCTAGAACGACCAT 389 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 310 TCTACGAGATGCGAAAACGCGCCGAGCTAAAAGCGGCGGTGGCTGAGCTAGAACGACCAT 369 Query: 390 GGGAACCGATTCATAAACCACCGAATCTATTCTCAGTTTGTGCTGATGAGCAAGTTAAAG 449 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 370 GGGAACCGATTCATAAACCACCGAATCTATTCTCAGTTTGTGCTGATGAGCAAGTTAAAG 429 Query: 450 TACTCGCGGATCGGTTTCAGAAACCTGGTGGATTTGATTTATGGACTGATAGAGATGGTC 509 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 430 TACTCGCGGATCGGTTTCAGAAACCTGGTGGATTTGATTTATGGACTGATAGAGATGGTC 489 Query: 510 CTCAATTGTTTGAGAGTGTTGATGATTTGCCTTCTGCTAGGTTTTTTCCTAAAGGTGTTG 569 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 490 CTCAATTGTTTGAGAGTGTTGATGATTTGCCTTCTGCTAGGTTTTTTCCTAAAGGTGTTG 549 Query: 570 TTCATAGTGTTAAACCTTATGGTAGATTATCATCTAGCTCTGTTGTTGATGATGGTGATG 629 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 550 TTCATAGTGTTAAACCTTATGGTAGATTATCATCTAGCTCTGTTGTTGATGATGGTGATG 609 Query: 630 AGAGTGAGGTTAAAGATGAAGAAATTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGA 689 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 610 AGAGTGAGGTTAAAGATGAAGAAATTGGGAAGAAGTTACGTGGTCGTAGGGTGAGGAAGA 669 Query: 690 GAGGTGATG 698 ||||||||| Sbjct: 670 GAGGTGATG 678 >At2g07750 68415.t00938 DEAD box RNA helicase, putative similar to RNA helicase RH25 [Arabidopsis thaliana] GI:3776023; contains Pfam profiles PF00270: DEAD/DEAH box helicase, PF00271: Helicase conserved C-terminal domain Length = 4061 Plus Strand HSPs: Score = 394 (65.2 bits), Expect = 8.2e-11, P = 8.2e-11 Identities = 228/374 (60%), Positives = 228/374 (60%), Strand = Plus / Plus