At4g20090 SYNGENTA 1822
Genomic Sequence (from TAIR)
taataagatccccaaaattattatgtatatgagattatttaccatttggatttgattacataaattttataaattaaaaaaattattggtaaatgaatta gaaaatttcactttttaatagtaattaagaagtaattaatcaattaattgagaggaaacaaaaaaattgaaatttattgataactcttagtggcgaagaa gagaagaagcagaaatcaaatgtcatcgtttatcaacaaacctctaaattgatcgaatatcttcttcaatcttcatctctctttcaaatctgcaaatgag agagctgtaagagttgcatcatctctatctctttctctctctctcttgcgaaaacaccaaacttttgaaatccccaaataagggtttaagcataaaccct acgagttcATGCCCAAATGCCCAATCCCAATCCGTATCAGCTTCTTCAGCTACTTTCTCAAAGAAAGTCGAATCCTTTCGAGTAACCCAGTTAACTTCTC TATCCATCTTCGCTTCTCTTCTTCTGTTTCGGTTTCT◄CC◄TAACCCGTCA►ATGGAA►GTGGTGGAGAATCCATTGGAAGCTCCAATCTCGGAGAAGAT GTTTAAATCAGCTCCCAAAATGGGTTCTTTCAAGTTGGGTGATTCTACTTTATCTTCAATGATTGAGAGTTACGCCAATTCGGGTGATTTTGATTCGGTA GAGAAGCTTTTGAGTCGAATTAGATTAGAGAACAGAGTGATTATAGAGCGTAGTTTCATTGTTGTCTTTAGAGCTTATGGGAAAGCACATTTGCCTGATA AAGCTGTAGACTTGTTTCATAGAATGGTTGATGAGTTTCGATGTAAACGTAGTGTTAAGTCGTTTAACTCTGTGTTGAATGTGATTATAAACGAGGGTCT TTATCATCGAGGATTGGAGTTTTATGATTATGTTGTGAATTCCAACATGAACATGAACATTTCTCCTAATGGGTTGAGTTTTAATTTGGTCATTAAGGCT CTTTGTAAGTTAAGATTTGTGGATAGAGCTATTGAGGTCTTCAGAGGAATGCCTGAGAGAAAGTGTTTGCCTGATGGTTATACGTATTGTACATTGATGG ATGGGTTGTGTAAGGAGGAAAGGATTGATGAGGCGGTTTTACTGTTGGATGAGATGCAGAGCGAGGGGTGTTCACCGAGTCCGGTTATATATAATGTGTT GATTGATGGATTGTGCAAGAAAGGGGATTTGACACGGGTGACAAAGCTTGTGGATAATATGTTTCTTAAGGGATGTGTTCCTAATGAGGTTACTTATAAT ACGCTTATTCATGGTCTATGTCTTAAGGGTAAGTTAGATAAAGCTGTTAGTCTCTTGGAGCGGATGGTGTCTAGCAAATGTATCCCAAATGATGTCACAT ATGGAACGCTGATTAATGGGTTGGTTAAGCAAAGACGAGCAACGGATGCGGTTAGGTTGTTGAGCTCTATGGAAGAAAGAGGGTATCATTTGAATCAGCA TATTTATTCGGTCCTTATAAGTGGGTTGTTCAAAGAGGGAAAGGCCGAGGAGGCTATGTCCTTGTGGAGGAAAATGGCAGAGAAAGGATGCAAGCCCAAT ATTGTTGTGTACAGTGTTCTTGTAGATGGTTTATGCCGCGAAGGGAAACCAAATGAAGCTAAAGAGATCCTTAATAGAATGATTGCTAGTGGCTGCTTGC CCAATGCGTATACGTATAGCTCATTGATGAAAGGATTCTTCAAAACTGGTCTTTGTGAAGAAGCGGTTCAAGTGTGGAAAGAGATGGATAAAACCGGATG TTCTCGAAATAAGTTTTGTTATAGTGTTCTAATCGATGGTCTTTGTGGGGTTGGGAGAGTTAAGGAGGCTATGATGGTGTGGTCAAAGATGCTCACTATC GGGATCAAACCTGATACAGTAGCTTATAGCTCAATTATAAAAGGTCTTTGTGGTATTGGCTCGATGGATGCGGCCTTAAAACTTTACCATGAGATGTTAT GCCAAGAAGAACCCAAGTCACAACCTGATGTTGTTACTTATAATATACTTCTTGATGGCTTATGTATGCAAAAAGATATCTCTAGAGCAGTAGATCTCTT GAACTCTATGTTAGATAGAGGTTGTGATCCCGATGTTATTACGTGTAACACCTTTTTGAATACTTTGAGCGAGAAGTCAAATTCTTGTGACAAAGGGAGG AGTTTTCTAGAAGAGCTTGTTGTAAGGCTCTTAAAGCGTCAGAGAGTATCAGGCGCGTGTACGATTGTGGAAGTAATGCTGGGTAAGTATCTGGCACCGA AGACCTCCACTTGGGCGATGATTGTTCGAGAGATCTGTAAACCAAAGAAGATCAATGCCGCCATTGATAAATGCTGGAGGAACCTGTGTACTTGAacact acagagcatttttgctcagatcccgtttccaccttaagagtctccatgcgtgggaactttttgcgcttctggagttttggaataccagaaatgcgcgcga aaaacaggtagtcagataaactatttttgaaattctaactttttaaacatgttacttgatttatgcgcgagtaagaccacattagctaaggtttataagg atatgaaaatcccattttgttgctattgaatcctccattgttaagatatgttctgtttcagacatgtttgatttgactatttgagatctttgttctgttt ctttcattgtttgattattatttattctcgcagcttgaaccaaaatgaaagatcttcgaagtctgattgggtctctttatggctgaaaacctcgagctcc tagg
Border_1 (1822_RBU)
GRAGAAACCGAAACAGAAGAAGAGAAGCGAAGATGGATAGAGAAGTTAACTGGGTTACTCGAAAGGATTCGACTTTCTTTGAGAAAGTAGCTGAAGAAGC
TGATACGGATTGGGATTGGGCATTTGGGCATGAACTYGTAGGGTTTATGCTTAAACCCTTATTTGGGGATTTCAAAAGT
| Start of BLAST Alignment: | NT 131 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 129 / Exon 1 of 1 |
BLAST Details: Query Sequence: 1822_RBU Length: (179 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g20090 68417.t02762 pentatricopeptide (PPR) repeat-con... 651 7.0e-24 1 At4g16790 68417.t02390 hydroxyproline-rich glycoprotein f... 171 0.062 1 At3g27330 68416.t03097 zinc finger (C3HC4-type RING finge... 164 0.14 1 At5g42900 68418.t04870 expressed protein similar to unkno... 159 0.21 1 >At4g20090 68417.t02762 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 1983 Minus Strand HSPs: Score = 651 (103.7 bits), Expect = 7.0e-24, P = 7.0e-24 Identities = 130/131 (99%), Positives = 131/131 (100%), Strand = Minus / Plus Query: 131 ATGCCCAAATGCCCAATCCCAATCCGTATCAGCTTCTTCAGCTACTTTCTCAAAGAAAGT 72 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 1 ATGCCCAAATGCCCAATCCCAATCCGTATCAGCTTCTTCAGCTACTTTCTCAAAGAAAGT 60 Query: 71 CGAATCCTTTCGAGTAACCCAGTTAACTTCTCTATCCATCTTCGCTTCTCTTCTTCTGTT 12 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 61 CGAATCCTTTCGAGTAACCCAGTTAACTTCTCTATCCATCTTCGCTTCTCTTCTTCTGTT 120 Query: 11 TCGGTTTCTYC 1 |||||||||+| Sbjct: 121 TCGGTTTCTCC 131 >At4g16790 68417.t02390 hydroxyproline-rich glycoprotein family protein contains proline-rich extensin domains, INTERPRO:IPR002965 Length = 1670 Minus Strand HSPs: Score = 171 (31.7 bits), Expect = 0.064, P = 0.062 Identities = 93/147 (63%), Positives = 93/147 (63%), Strand = Minus / Plus
Border_2 (1822_LBD)
AYGGAMGTGGTGGAGAATCCATTGGAWGCTCCAATCTCGSASAAGATGTTTAAATCAGCTCCCAAAATGGGYTCTTTCAAGTTGGGKGAKTCTACTTTAT
CTTCAATGATTGAGAGTTACKCCWATTCGGGTGATTTYGATTCGGTMGAGAAGCTTTTGAGYCGAMTTAGATTAGAGAACAGAGTGATTATAGAGCGTAG
TTTCATTGTTGTCTTTAGAGCTTATGGGAAAGCACATTTGCCTGATAAAGCTGTAGACTTGTTTCATAGAATGGTTGATGAGCTTCGATGCAAACGTAGY
GTTAAGTCGTTYAACTCTGTGKWGAATGTGATTATAAACVAGGGTCTTTATCATCGAGSATTGGAGGTTTATGMTTATGTTGTGAATTCCAACATGAACA
TGAACATTTCTCCTAATGGGTTGAGTTTTAATTTGGTCATTAAGGCTCTTTGTAAGTTAAGATTTGTGGATAGAGCTATTGAGGTCTTCAGAGGAAYGCC
TGAGAGAAAGYGTTYSCCTGATGGTTATMCGTATTGTACATTGAKGGAKGGGTHGKGTAAGGAGGAAAGGATTGATGAGGCGGTTTTACTGTTGSATGAG
ATGCAGADCGAGGGGTGTTCACCGAGTCCGGTKATATATAATGTGTTGATTGATGGATTGTGCVAGAAAGGGGATYTGWCACGGGTGACAAAGCTBGTGG
ATAATATGTTTCTTAAGGGATGWGTTCCTAATGAGGTTRCTTATMATRCGCTYATTCATGGTCTATGTCTTAAGGGTAAGTTAGATAAMGCTGTTAGTCT
CTTGGASCGGATGGTGTCTAGCAAATGTATCCCAWATGATGTCAC
| Start of BLAST Alignment: | NT 141 / Exon 1 of 1 |
| First 15 bp Perfect Match: | NT 147 / Exon 1 of 1 |
BLAST Details: Query Sequence: 1822_LBD Length: (845 letters) Database: Genes from AGI, Total Genome (DNA); Smallest Sum High Probability Sequences producing High-scoring Segment Pairs: Score P(N) N At4g20090 68417.t02762 pentatricopeptide (PPR) repeat-con... 4008 1.3e-176 1 At5g39710 68418.t04474 pentatricopeptide (PPR) repeat-con... 488 2.3e-16 1 At1g13800 68414.t01451 pentatricopeptide (PPR) repeat-con... 410 1.2e-10 1 At2g16880 68415.t01844 pentatricopeptide (PPR) repeat-con... 397 5.3e-10 1 >At4g20090 68417.t02762 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 1983 Plus Strand HSPs: Score = 4008 (607.4 bits), Expect = 1.3e-176, P = 1.3e-176 Identities = 797/845 (94%), Positives = 837/845 (99%), Strand = Plus / Plus Query: 1 AYGGAMGTGGTGGAGAATCCATTGGAWGCTCCAATCTCGSASAAGATGTTTAAATCAGCT 60 |+|||+||||||||||||||||||||+||||||||||||+|+|||||||||||||||||| Sbjct: 142 ATGGAAGTGGTGGAGAATCCATTGGAAGCTCCAATCTCGGAGAAGATGTTTAAATCAGCT 201 Query: 61 CCCAAAATGGGYTCTTTCAAGTTGGGKGAKTCTACTTTATCTTCAATGATTGAGAGTTAC 120 |||||||||||+||||||||||||||+||+|||||||||||||||||||||||||||||| Sbjct: 202 CCCAAAATGGGTTCTTTCAAGTTGGGTGATTCTACTTTATCTTCAATGATTGAGAGTTAC 261 Query: 121 KCCWATTCGGGTGATTTYGATTCGGTMGAGAAGCTTTTGAGYCGAMTTAGATTAGAGAAC 180 +||+|||||||||||||+||||||||+||||||||||||||+|||+|||||||||||||| Sbjct: 262 GCCAATTCGGGTGATTTTGATTCGGTAGAGAAGCTTTTGAGTCGAATTAGATTAGAGAAC 321 Query: 181 AGAGTGATTATAGAGCGTAGTTTCATTGTTGTCTTTAGAGCTTATGGGAAAGCACATTTG 240 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 322 AGAGTGATTATAGAGCGTAGTTTCATTGTTGTCTTTAGAGCTTATGGGAAAGCACATTTG 381 Query: 241 CCTGATAAAGCTGTAGACTTGTTTCATAGAATGGTTGATGAGCTTCGATGCAAACGTAGY 300 |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||+ Sbjct: 382 CCTGATAAAGCTGTAGACTTGTTTCATAGAATGGTTGATGAGTTTCGATGTAAACGTAGT 441 Query: 301 GTTAAGTCGTTYAACTCTGTGKWGAATGTGATTATAAACVAGGGTCTTTATCATCGAGSA 360 |||||||||||+|||||||||++|||||||||||||||| ||||||||||||||||||+| Sbjct: 442 GTTAAGTCGTTTAACTCTGTGTTGAATGTGATTATAAACGAGGGTCTTTATCATCGAGGA 501 Query: 361 TTGGAGGTTTATGMTTATGTTGTGAATTCCAACATGAACATGAACATTTCTCCTAATGGG 420 |||||| ||||||+|||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 502 TTGGAGTTTTATGATTATGTTGTGAATTCCAACATGAACATGAACATTTCTCCTAATGGG 561 Query: 421 TTGAGTTTTAATTTGGTCATTAAGGCTCTTTGTAAGTTAAGATTTGTGGATAGAGCTATT 480 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 562 TTGAGTTTTAATTTGGTCATTAAGGCTCTTTGTAAGTTAAGATTTGTGGATAGAGCTATT 621 Query: 481 GAGGTCTTCAGAGGAAYGCCTGAGAGAAAGYGTTYSCCTGATGGTTATMCGTATTGTACA 540 ||||||||||||||||+|||||||||||||+|||++||||||||||||+||||||||||| Sbjct: 622 GAGGTCTTCAGAGGAATGCCTGAGAGAAAGTGTTTGCCTGATGGTTATACGTATTGTACA 681 Query: 541 TTGAKGGAKGGGTHGKGTAAGGAGGAAAGGATTGATGAGGCGGTTTTACTGTTGSATGAG 600 ||||+|||+|||| |+||||||||||||||||||||||||||||||||||||||+||||| Sbjct: 682 TTGATGGATGGGTTGTGTAAGGAGGAAAGGATTGATGAGGCGGTTTTACTGTTGGATGAG 741 Query: 601 ATGCAGADCGAGGGGTGTTCACCGAGTCCGGTKATATATAATGTGTTGATTGATGGATTG 660 ||||||| ||||||||||||||||||||||||+||||||||||||||||||||||||||| Sbjct: 742 ATGCAGAGCGAGGGGTGTTCACCGAGTCCGGTTATATATAATGTGTTGATTGATGGATTG 801 Query: 661 TGCVAGAAAGGGGATYTGWCACGGGTGACAAAGCTBGTGGATAATATGTTTCTTAAGGGA 720 ||| |||||||||||+||+|||||||||||||||| |||||||||||||||||||||||| Sbjct: 802 TGCAAGAAAGGGGATTTGACACGGGTGACAAAGCTTGTGGATAATATGTTTCTTAAGGGA 861 Query: 721 TGWGTTCCTAATGAGGTTRCTTATMATRCGCTYATTCATGGTCTATGTCTTAAGGGTAAG 780 ||+|||||||||||||||+|||||+||+||||+||||||||||||||||||||||||||| Sbjct: 862 TGTGTTCCTAATGAGGTTACTTATAATACGCTTATTCATGGTCTATGTCTTAAGGGTAAG 921 Query: 781 TTAGATAAMGCTGTTAGTCTCTTGGASCGGATGGTGTCTAGCAAATGTATCCCAWATGAT 840 ||||||||+|||||||||||||||||+|||||||||||||||||||||||||||+||||| Sbjct: 922 TTAGATAAAGCTGTTAGTCTCTTGGAGCGGATGGTGTCTAGCAAATGTATCCCAAATGAT 981 Query: 841 GTCAC 845 ||||| Sbjct: 982 GTCAC 986 >At5g39710 68418.t04474 pentatricopeptide (PPR) repeat-containing protein contains Pfam profile PF01535: PPR repeat Length = 2244 Plus Strand HSPs: Score = 488 (79.3 bits), Expect = 2.3e-16, P = 2.3e-16 Identities = 377/666 (56%), Positives = 399/666 (59%), Strand = Plus / Plus